Pressure Denaturation of Proteins in Water: Revisiting a Heteropolymer Collapse Model
نویسندگان
چکیده
Understanding the environmental factors that cause proteins to unfold from their native conformations to form biologically-inactive or denatured states represents one of the most important challenges in the biological and pharmaceutical sciences. Although it has been known for some time that proteins can be denatured by heating or cooling at high or low pressure, only semiempirical thermodynamic approaches have been developed for predicting the range of protein stability in the pressure-temperature plane [1]. An analytical molecular-level theory that can give insights into the state-dependent driving forces for unfolding would be an extremely useful complement to recent experiments (see, e.g. [2]), information theory approaches [3], and computer simulations [4].
منابع مشابه
The effect of sequence on the conformational stability of a model heteropolymer in explicit water.
We investigate the properties of a two-dimensional lattice heteropolymer model for a protein in which water is explicitly represented. The model protein distinguishes between hydrophobic and polar monomers through the effect of the hydrophobic monomers on the entropy and enthalpy of the hydrogen bonding of solvation shell water molecules. As experimentally observed, model heteropolymer sequence...
متن کاملA possible mechanism for cold denaturation of proteins at high pressure
We study cold denaturation of proteins at high pressures. Using multicanonical Monte Carlo simulations of a model protein in a water bath, we investigate the effect of water density fluctuations on protein stability. We find that above the pressure where water freezes to the dense ice phase (≈ 2 kbar), the mechanism for cold denaturation with decreasing temperature is the loss of local low-dens...
متن کاملPossible mechanism for cold denaturation of proteins at high pressure.
We study cold denaturation of proteins at high pressures. Using multicanonical Monte Carlo simulations of a model protein in a water bath, we investigate the effect of water density fluctuations on protein stability. We find that above the pressure where water freezes to the dense ice phase (approximately 2 kbars) the mechanism for cold denaturation with decreasing temperature is the loss of lo...
متن کاملHow water contributes to pressure and cold denaturation of proteins
The mechanisms of coldand pressure-denaturation of proteins are matter of debate and are commonly understood as due to water-mediated interactions. Here we study several cases of proteins, with or without a unique native state, with or without hydrophilic residues, by means of a coarse-grain protein model in explicit solvent. We show, using Monte Carlo simulations, that taking into account how ...
متن کاملThe pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins (protein foldingyprotein folding kineticsyhydrophobic effectyactivation volumesyprotein unfolding)
Proteins can be denatured by pressures of a few hundred MPa. This finding apparently contradicts the most widely used model of protein stability, where the formation of a hydrophobic core drives protein folding. The pressure denaturation puzzle is resolved by focusing on the pressure-dependent transfer of water into the protein interior, in contrast to the transfer of nonpolar residues into wat...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2004